Niklas Reimer
Ph.D. candidate
Marie-Curie-Straße
23562 Lübeck
Building 67 (BMF)
2nd floor, room 44.00
Position and responsibilities
Scientific profile
Selected Publications
Position and responsibilities
- Health Information interoperability
- Omics pipeline development
- Omics data integration
- Metadata guided data integration
- UKSH/UzL PM4Onco
- UKSH Medical Data Integration Center (MeDIC)
- UCCSH Molecular Tumor Board
Scientific profile
Niklas Reimer graduated in Medical Informatics at the Universität zu Lübeck in 2020. Since then, he has been a member of the Group for Medical Systems Biology and is involved in the development of IT solutions for the molecular tumor board of the University Cancer Center Schleswig-Holstein. He works closely with the MIRACUM consortium and the IT Center for Clinical Research, Universität zu Lübeck.
CV
Scientific career
- since 2024 Research Associate, Medical Data Integration Center (MeDIC), University Hospital Schleswig-Holstein, Campus Lübeck
- since 2020 Research Associate, Medical Systems Biology, Lübeck Institute of Experimental Dermatology, Universität zu Lübeck
- 2019 – 2020 Master of Science (Medical Informatics), Universität zu Lübeck
- 2015 – 2019 Bachelor of Science (Medical Informatics), Universität zu Lübeck
Memberships
- Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS)
- Gesellschaft für Informatik (GI)
- Verband der Elektrotechnik Elektronik Informationstechnik (VDE)
Selected Publications
7575694
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american-chemical-society
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1105
https://medsysbio-luebeck.de/wp-content/plugins/zotpress/
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Renner, C.; Reimer, N.; Christoph, J.; Busch, H.; Metzger, P.; Boerries, M.; Ustjanzew, A.; Boehm, D.; Unberath, P. Extending CBioPortal for Therapy Recommendation Documentation in Molecular Tumor Boards: Development and Usability Study. JMIR Med Inform 2023, 11, e50017. https://doi.org/10.2196/50017.
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Metzger, P.; Hess, M. E.; Blaumeiser, A.; Pauli, T.; Schipperges, V.; Mertes, R.; Christoph, J.; Unberath, P.; Reimer, N.; Scheible, R.; Illert, A. L.; Busch, H.; Andrieux, G.; Boerries, M. MIRACUM-Pipe: An Adaptable Pipeline for Next-Generation Sequencing Analysis, Reporting, and Visualization for Clinical Decision Making. Cancers 2023, 15 (13), 3456. https://doi.org/10.3390/cancers15133456.
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Witte, H. M.; Riedl, J.; Künstner, A.; Fähnrich, A.; Ketzer, J.; Fliedner, S. M. J.; Reimer, N.; Bernard, V.; Von Bubnoff, N.; Merz, H.; Busch, H.; Feller, A.; Gebauer, N. Molecularly Stratified Treatment Options in Primary Refractory DLBCL/HGBL with MYC and BCL2 or BCL6 Rearrangements (HGBL, NOS with MYC/BCL6). Targ Oncol 2023, 18 (5), 749–765. https://doi.org/10.1007/s11523-023-00983-5.
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Witte, H. M.; Fähnrich, A.; Künstner, A.; Riedl, J.; Fliedner, S. M. J.; Reimer, N.; Hertel, N.; von Bubnoff, N.; Bernard, V.; Merz, H.; Busch, H.; Feller, A.; Gebauer, N. Primary Refractory Plasmablastic Lymphoma: A Precision Oncology Approach. Frontiers in Oncology 2023, 13. https://doi.org/10.3389/fonc.2023.1129405.
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Bastian, L.; Hartmann, A. M.; Beder, T.; Hänzelmann, S.; Kässens, J.; Bultmann, M.; Hoeppner, M. P.; Franzenburg, S.; Wittig, M.; Franke, A.; Nagel, I.; Spielmann, M.; Reimer, N.; Busch, H.; Schwartz, S.; Steffen, B.; Viardot, A.; Döhner, K.; Kondakci, M.; Wulf, G.; Wendelin, K.; Renzelmann, A.; Kiani, A.; Trautmann, H.; Neumann, M.; Gökbuget, N.; Brüggemann, M.; Baldus, C. D. UBTF::ATXN7L3 Gene Fusion Defines Novel B Cell Precursor ALL Subtype with CDX2 Expression and Need for Intensified Treatment. Leukemia 2022. https://doi.org/10.1038/s41375-022-01557-6.
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Unberath, P.; Mahlmeister, L.; Reimer, N.; Busch, H.; Boerries, M.; Christoph, J. Searching of Clinical Trials Made Easier in CBioPortal Using Patients’ Genetic and Clinical Profiles. Appl Clin Inform 2022, 13 (02), 363–369. https://doi.org/10.1055/s-0042-1743560.
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Reimer, N.; Unberath, P.; Busch, H.; Börries, M.; Metzger, P.; Ustjanzew, A.; Renner, C.; Prokosch, H.-U.; Christoph, J. Challenges and Experiences Extending the CBioPortal for Cancer Genomics to a Molecular Tumor Board Platform. In Studies in Health Technology and Informatics; Delgado, J., Benis, A., De Toledo, P., Gallos, P., Giacomini, M., Martínez-García, A., Salvi, D., Eds.; IOS Press, 2021. https://doi.org/10.3233/SHTI210833.
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Reimer, N.; Unberath, P.; Busch, H.; Ingenerf, J. FhirSpark – Implementing a Mediation Layer to Bring FHIR to the CBioPortal for Cancer Genomics. In Studies in Health Technology and Informatics; Mantas, J., Stoicu-Tivadar, L., Chronaki, C., Hasman, A., Weber, P., Gallos, P., Crişan-Vida, M., Zoulias, E., Chirila, O. S., Eds.; IOS Press, 2021. https://doi.org/10.3233/SHTI210169.
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Reimer, N.; Ulrich, H.; Busch, H.; Kock-Schoppenhauer, A.-K.; Ingenerf, J. OpenEHR Mapper – A Tool to Fuse Clinical and Genomic Data Using the OpenEHR Standard. In Studies in Health Technology and Informatics; Röhrig, R., Beißbarth, T., Brannath, W., Prokosch, H.-U., Schmidtmann, I., Stolpe, S., Zapf, A., Eds.; IOS Press, 2021. https://doi.org/10.3233/SHTI210055.
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Kock-Schoppenhauer, A.-K.; Schreiweis, B.; Ulrich, H.; Reimer, N.; Wiedekopf, J.; Kinast, B.; Busch, H.; Bergh, B.; Ingenerf, J. Medical Data Engineering – Theory and Practice. In Advances in Model and Data Engineering in the Digitalization Era; Bellatreche, L., Chernishev, G., Corral, A., Ouchani, S., Vain, J., Eds.; Springer International Publishing: Cham, 2021; Vol. 1481, pp 269–284. https://doi.org/10.1007/978-3-030-87657-9_21.
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Groppe, S.; Reimer, N. Code Generation for Big Data Processing in the Web Using WebAssembly. Open Journal of Cloud Computing (OJCC) 2019, 6 (1), 1–15.